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Sophos exclusions for Microsoft Endpoint Configuration Manager?

Is there anything special that needs to be done for Configuration Manager to work with Intercept-X? Some (not all and it changes A LOT) computers aren't seeing deployments in Software Center. Some computers will see 5 one day then all the next. Some will see them all one day and then see 5 less the next. It isn't consistent and Microsoft hasn't been any help. I would remove Sophos and test but I can't get it to consistently fail. I have %WINDIR%\CCM and %WINDIR%\CCMCACHE in Global Exclusions (Sophos Central - Global Settings - Global Exclusions) for Real-time and scheduled. Is there anything else that needs to be done? Does anyone have any suggestions that I might try?

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